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Biotechnology Information tblastn algorithm
Tblastn Algorithm, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/the+tblastn+algorithm/tblastn/10__30901_slash_2658___6266___2022___3___o2-49-45-40
Average 86 stars, based on 1 article reviews
tblastn algorithm - by Bioz Stars, 2026-09
86/100 stars

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Article Title: Widespread occurrence of natural genetic transformation of plants by Agrobacterium.
Article Snippet: Key message Naturally transgenic plant species occur on an unexpectedly large scale.. Abstract Agrobacterium-mediated gene transfer leads to the formation of crown galls or hairy roots, due to expression of transferred T-DNA genes.. Spontaneous regeneration of transformed cells can produce natural transformants carrying cellular T-DNA (cT-DNA) sequences of bacterial origin.

Article Title: Expression sequences of opine synthase genes in natural GMOs based on analysis of their transcriptomes
Article Snippet: The research methods included bioinformatic search using queries based on the sequences of opine synthase proteins from Agrobacterium rhizogenes, A. tumefaciens and A. vitis, their homologues from Ipomoea and Nicotiana plants, in the TSA database of the National Center for Biotechnology Information (NCBI) using the TBLASTN algorithm with default settings.

Article Title: Further Insights into the Architecture of the P N Promoter That Controls the Expression of the bzd Genes in Azoarcus
Article Snippet: The amino-acid sequences of the open reading frames of proteins encoded in the bzd operon were compared with those present in databases using the TBLASTN algorithm at the National Center for Biotechnology Information (NCBI) server [ ] ( http://blast.ncbi.nlm.nih.gov/Blast.cgi ).

Article Title: Transcriptome mining extends the host range of the Flaviviridae to non-bilaterians
Article Snippet: The de novo transcriptome assemblies available at the National Center for Biotechnology Information (NCBI) Transcriptome Shotgun Assembly (TSA) Database ( https://www.ncbi.nlm.nih.gov/genbank/tsa/ ) (as of June 2021) were also screened using the translated Basic Local Alignment Search Tool algorithm (TBLASTN) under default scoring parameters and the BLOSUM45 matrix.

Construct:

Article Title: Identifications, Characteristics, and Expression Patterns of Small Heat Shock Protein Genes in a Major Mulberry Pest, Glyphodes pyloalis (Lepidoptera: Pyralidae)
Article Snippet: The PrimeScript RT reagent Kit (Takara, Dalian, China) was used to produce first-strand DNA, followed by reverse transcription following the manufacturer’s recommendations, and the synthesized cDNA was stored at −20°C. .. cDNA sequences encoding sHSPs were retrieved from a previously constructed G. pyloalis transcriptome dataset (GenBank SRR9959773 ) using the TBLASTN algorithm ( E -value < 1 × 10 −5 ), and all candidate genes were manually checked using BLASTX ( E -value < 1 × 10 −5 ) against the GenBank nonredundant (nr) protein database at the National Center for Biotechnology Information (NCBI). ..

Sequencing:

Article Title: Predicted Membrane-Associated Domains in Proteins Encoded by Novel Monopartite Plant RNA Viruses Related to Members of the Family Benyviridae .
Article Snippet: .. Sequence comparisons were carried out using the BLAST algorithm (TBLASTn and BLASTp) at the National Center for Biotechnology Information (NCBI). ..

Article Title: Use of the soybean sucrose synthase promoter to increase plant seed lipid content
Article Snippet: Sequence information from the Medicago truncatula Genome Project is available at the J. Craig Venter Institute. .. Specifically, the Glyma13g17420 amino acid sequence (SEQ ID NO: 6) was used with the TBLASTN algorithm provided by National Center for Biotechnology Information (NCBI) with default parameters except the Filter Option was set to OFF. .. The Medicago truncatula homolog identified corresponded to Medtr4g124660.2 and the predicted CDS and corresponding amino acid sequences for Medtr4g124660.2 are set forth in SEQ ID NO: 79 and SEQ ID NO: 80, respectively.

Article Title: Discovery of Novel Crustacean and Cephalopod Flaviviruses: Insights into the Evolution and Circulation of Flaviviruses between Marine Invertebrate and Vertebrate Hosts
Article Snippet: .. 131 132 Results 133 Discovery and annotation of novel marine invertebrate flaviviruses 134 To discover divergent flaviviruses, we queried the assembled transcriptomes deposited 135 from all Animalia in the Transcriptome Shotgun Assembly Sequence Database (TSA) 136 hosted by the National Center for Biotechnology Information (NCBI) using the tblastn 137 algorithm flavivirus polyprotein sequences (29). ..



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